Pubudu Nawarathna

Bioinformatician in Montreal, Canada

A highly responsible, self motivated, progress focused punctual team player graduated from McGill University and with more than 3 years of working experience in Bioinformatics Pipeline development, NGS data analysis and hands-on experience with linux based HPCs.

My Portfolio

1. Bioinformatics Pipeline Development (Python and Bash)

Few of my individual contributions to development of pipelines /protocols for the GenPipes workflow Management System.

  • Development of epiQC pipeline to assess the quality of ChIP-Seq signal tracks.
  • Technical Documentation for epiQC
  • Addition of DiffBind R package to perform differential binding analysis to the ChiP-Seq pipeline.
    • R script to run the analysis
      • The script generates an automated HTML report using R Markdown render function.
    • The script which internally calls the DiffBind.R in order to run the analysis is here.
    • A sample output HTML report is here.
  • A Nextflowpipeline for genome scaffolding using Hi-C Seq reads is here.

2. Links to two of my shiny Apps.

3. YouTube Demo Videos I created.

4. LinkedIn Learning Certificates

5. Hacker Rank Certificates

  • Work
    • C3G
  • Education
    • McGill University Faculty of Medicine
    • University of Colombo